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pKOM-7

Complete genome of BK virus, lineage IVb2

Catalog number RDB07267
Resource name pKOM-7
Clone info. Complete genome of BK virus, lineage IVb2. BKV genomic DNA derived from the urine of a Japanese bone marrow transplant patient.
Vector backbone pUC19 (Plasmid)
Size of vector backbone 2,690 bp
Selectable markers Amp^r
Gene/insert name Hum_Polyoma BKV genomic DNA
Reference of insert sequence AB211388 (DDBJ accession number)
Depositor|Developer Yogo, Yoshiaki |
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External Database
Hum_Polyoma BKV

            Reference sequence
              
             

            Distribution information

            Please check terms and conditions set forth by the depositor, which are specified in the RIKEN BRC Catalog and/or Web Catalog.
            Terms and conditions for distribution In publishing the research results obtained by use of the BIOLOGICAL RESOURCE, a citation of literature(s) designated by the DEPOSITOR is requested. (J. Mol. Evol., 63, 341-352 (2006))
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            提供条件 利用者は、研究成果の公表にあたって寄託者の指定する文献を引用する (J. Mol. Evol., 63, 341-352 (2006))。
            提供依頼 手続きの詳細は、「提供申込みについて[link]」をご覧ください。営利目的利用についてはお問い合わせください。
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            提供同意書 (MTA、非営利機関による非営利学術研究用)[Word]

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            RDB07267 pKOM-7 DNA solution

            Please review the QC test results indicated by check icon below as well as clone information before placing your order.

            How to cite this biological resource

            Materials & Methods section:

            The pKOM-7 was provided by the RIKEN BRC through the National BioResource Project of the MEXT, Japan (cat. RDB07267).

            Reference section:

            Nishimoto, Y., Takasaka, T., Hasegawa, M., Zheng, H.Y., Chen, Q., Sugimoto, C., Kitamura, T., Yogo, Y., Evolution of BK virus based on complete genome data. J. Mol. Evol., 63, 341-352 (2006). PMID 16897259.

            Further references such as user reports and related articles (go to bottom)


            References and tips

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            QC test results

            RIKEN BRC has sequenced portions of this material for quality test.
            Please review the QC test results indicated by check icon as well as clone information before placing your order.

            Test sheet RDB07267_A8F5p1-2.pdf check

            Nucleotide sequence of a portion of this resource (if available).

            Primer: reverse-2 (Pr0100)
            Region: insert 5'
            Sequence file: RDB07267_A8F5a.seq check
            >07267_07267_A8F5_1_Reverse2_C03_09_ABI24.ab1
                1 AAACATCATT ACGCCAGCTT GCATGCCTGC AGGTCGACTC TAGAGGATCC CCCATTTCTG
               61 GATTTAGAAA GCATTCTACT TCTGTTATAG CATCTACCCC AGTTTTAACT TCTAGAACTT
              121 CTACTCCTCC TTTTATTAGT AGTTTTGGCA CTTGCACGGG TTCCTTTGGC TTTTTGGGAG
              181 CTGCCCCTGG ACACTCTCCT TTTCTTTTGG TTGGGGCCAT CTTCATATGC TTCAAGAGCA
              241 GGTGTTACAG TCCCGTACAG GCCTAGAAGC AAAGGCAACA TCCATTGAGG AGCAGTTCTT
              301 TGATTAGCAC CTCCTGGGGC AATAGTTTTT TCTATAAACT CTCCTGAATG TACATTCTCC
              361 TTATTTCTTA ACTCCATTCT TTGGGTAACT TCTTGTATAC TGTCAGCATC ATCTATTCTG
              421 TAGGTATGGC CAAAATTTAC TTGGGTTCCT TCCCTTTCAG CAACTTGCCT AACCATTGAA
              481 GGCCTAATAG GGGACAAATT AGAATAATAA TCCTGAATAT AATTATAAAA GTTTATAGGG
              541 GCATTTACAA TTGTCCAGGT AGTTTCTTCC AAAAATCTAG CCAAGGAGTC TCTAAAGAAT
              601 CTCTCTGTTC TTCTTTGCAA TTCTTGTGAA GTTATAGCAG GTATATCATC CCTAATAACA
              661 TGCCACAAAG CCTGGGAAAT AGTAGCAAAC AAAGAAGGAC CCCAATGCCT AGGATCTAGG
              721 TATTGAATAT TATTTACAAA AGTATTTACA CCAGGAAACA AAATATCATA GTACTCATCT
              781 GGGTTAAACA ATTCCAATGC CATGCCTGAT TGCTGATAAA GGCCTACAGT GGAAACTTTG
              841 TGATCCCAAT CACTAAAAAA ACCTATACCC TACTTGAGCC AAAGAACTAA TACCAGTAAC
              901 AGTTTTGAAA TTAAAGCAGC AAACCCAGCA ATAGCCCCCT GGAGCACCAG CAATTACAGC
              961 ATATGTTTTG AGGAGTTAGG CCTATAGCAG CTATAGCCTT CTGAGGTTAC TTGTTATGCC
             1021 CTCTACAGTA GCAAGGGAAT GCATTTTGAC TTTCTTATAG CAGCAGCCAG GTCGTCCCCA
            1081 AGCCAGCAAT TTTTCAAGGT CA
            //
            Primer: M13_-40 (Pr0410)
            Region: insert 3'
            Sequence file: RDB07267_A8F5b.seq check
            >07267_07267_A8F5_1_M13_-40_D03_12_ABI24.ab1
                1 CAGCGGGGGA ATTCGGAGCT CGGTACCGGG GATCCAGATA ATGACCTTAG GGGCTACAGT
               61 CTAAGACTAA CTGCTGAAAC TGCCTTTGAC AGTGATAGCC CAGACAGAAA AATGCTTCCC
              121 TGTTACAGCA CAGCAAGAAT TCCACTACCT AATTTGAATG AGGATCTAAC CTGTGGAAAT
              181 CTACTAATGT GGGAGGCTGT GACTGTAAAA ACAGAGGTTA TGGGAATAAC TAGTATGCTT
              241 AACCTTCATG CAGGGTCCCA GAAAGTACAT GAGAATGGTG GAGGCAAACC TATTCAAGGC
              301 AGCAATTTTC ACTTTTTTGC TGTGGGTGGG GACCCCTTGG AAATGCAGGG AGTACTTATG
              361 AACTACAGAA CAAAGTACCC AGAAGGTACT GTTACCCCAA AAAATCCCAC AGCTCAGTCC
              421 CAGGTAATGA ATACTGACCA TAAGGCCTAC TTGGACAAAA ACAATGCTTA TCCAGTGGAA
              481 TGCTGGATTC CTGACCCTAG TAGAAATGAA AATACTAGAT ATTTTGGAAC ATACACAGGA
              541 GGGGAAAATG TTCCCCCAGT ACTTCATGTA ACCAACACAG CTACCACAGT GTTGCTGGAT
              601 GAACAGGGTG TAGGGCCTCT GTGTAAAGCT GATAGCCTGT ATGTTTCAGC TGCTGATATT
              661 TGTGGACTGT TTACTAACAG CTCTGGAACA CAACAGTGGA GGGGCCTTCC AAGATATTTT
              721 AAGATTCGCC TGAGAAAAAG ATCTGTGAAG AACCCTTACC CAATTTCCTT TTTGCTTAGT
              781 GACCTTATAA ACAGGAGAAC CCAGAGAGTG GATGGGCAGC CTATGTATGG TATGGAGTCT
              841 CAGGTGGAGG AGGTCAGGGT GTTTGATGGC ACAGAACAGC TTCCAGGGGA CCCAGATATG
              901 ATAAGATATA TTGACAGACA GGGACAATTG CAAACAAAAA ATGGTTTAAA CAAGGTGCTT
              961 TTTATTGTAC ATATACATGC TTAATAAATG CTGCTTTTTA TATTACACAT TTTAATCTTT
             1021 GTGTTATTTT TGGGGGTGGG TGGTTTTTAG GCCTTTTTAA AACACTGCAA GCGTTTTACA
            1081 CGAATGTAAC CTTCTTTCCA ACTTTATTAT G
            //
            Primer: Bkvirus_F1 (Pr0564)
            Region: insert mid
            Sequence file: RDB07267_A8F5c.seq check
            >07267_07267_A8F5_1_BKvirus_F1_F03_18_ABI24.ab1
                1 ATGGGTCTGA TCTTCTTCTC TTGTTATATC AAGAATACAT TTTCCCATGC ATATATTATA
               61 TTTCATCCTT GAAAAAGTAT ACATACTTAT CTCAGAATCC AGCCTTTCCT TCCATTCAAC
              121 AATTCTAGAC TGTATATCTT GTGCAAAATC AGCTACAGGC CTGAACCAAA TTAGCAGTAG
              181 CAACAAGGTC ATTCCACTTT GTAATATTCT TTTTTCAAGT AAAAATTCTG AGTTTTGCAG
              241 GGATTTTCTT AAATAAATTT TAGGTCTAAA ATCTATCTGT CTTACAAATC TAGCCTGCAA
              301 GGTTTTGGGG ACAGGATACT CATTCATTGT AACTAAACCT GGTGGAAATA TTTGGGTTCT
              361 TTTGTTTAAG TGTTTCTTTT CTAAATTAAC TTTGACACTT CCATCTAAAT AATCCCTTAA
              421 ACTGTCTAAA TTGTTTATTC CATGTCCTGA AGGCAAATCC TTTGATTCAG CTCCTGTTCC
              481 CTTCACATCT TCAAAAACAA CCATATACTG ATCTATAGCC ACACCCAGTT CAAAAGTAAG
              541 CCTTTCCATG GGTAAATTCA CATTTAAAGC TTTGCCTCCA CATAAATCTA ACAACCCTGC
              601 AGCTAGTGTT GTTTTTCCAC TATCAATTGG ACCTTTGAAC AACCAGTATC TTCTTTTAGG
              661 TACATTAAAA ACAATACAGT GCAGGAAATC AAATATAACA GAATCCATTT TAGGTAGCAA
              721 ACAGTGCAGC CAGGCAACTC CTGCCATATA TTGTTCTAGT ACAGCATTTC CATGAGCTCC
              781 AAATATTAAA TCCATTTTAT CTAATATATG ATTAAATCTG TCTGTTAGCA TTTCTTCTCT
              841 GGTCATATGG AGGGTATCTA CCCTTTTTTT TAGCTAACAC TGTATCCACT GCTTGCTGAC
              901 AAATACTTTT TTTGATTTTT TTACTTTCTG CAAAAAATGG TAGCATTTTG CAAAAATGCT
              961 TTTTCATGAT AATTAAGGTG GTAGGTTGGT CTTTTTTTGA CACTTTTTAC ACTCGTCTAC
            1021 ATGTACCTGA AAGTCTAAAT ACATAACCCC TAATTAGGTA
            //

            Please visit Sequencing and PCR primers for primer information.


            References

            Original, user report and related articles

            original Nishimoto, Y., Evolution of BK virus based on complete genome data. J. Mol. Evol., 63, 341-352 (2006). PMID 16897259.

            2023.05.01

            GNP_filter3_RDBDEP_html_230501.pl