Bifidobacterium longum–E. coli shuttle vector.
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Other clones in our bank
External Database Reference sequence |
Sequence (full) | RDB15973zzt01.seq compiled by us |
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Please check terms and conditions set forth by the depositor, which are specified in the RIKEN BRC Catalog and/or Web Catalog.
Terms and conditions for distribution | In publishing the research results obtained by use of the BIOLOGICAL RESOURCE, a citation of the following literature designated by the DEPOSITOR is requested. (Hirayama et al., Appl. Environ. Microbiol., 78(14):4984-4994 (2012)). The availability of the BIOLOGICAL RESOURCE is limited to a not-for-profit academic purpose. |
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Ordering | Order form [Credit Card Payment] [Bank Transfer Payment] MTA, for use for not-for-profit academic purpose [Word] MTA, for use for for-profit purpose [Word] Please visit Information of Request for Distribution.[link] |
提供条件 | 利用者は、研究成果の公表にあたって寄託者の指定する文献を引用する(Hirayama et al., Appl. Environ. Microbiol., 78(14):4984-4994 (2012))。本リソースは,非営利の学術研究に限って提供する。 |
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提供依頼 | 提供依頼書 [Word] 提供同意書 (MTA, 非営利学術目的用)[Word] 提供同意書 (MTA, 営利目的用)[Word] 手続きの概要は、「提供申込みについて[link]」をご覧ください。 |
Catalog # | Resource name | Shipping form | Fee (non-profit org.) |
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RDB15973 | pBS423 delta repA | DNA solution |
Materials & Methods section:
The pBS423 delta repA was provided by the RIKEN BRC through the National BioResource Project of the MEXT, Japan (cat. RDB15973). |
Reference section:
Hirayama, Y., Sakanaka, M., Fukuma, H., Murayama, H., Kano, Y., Fukiya, S., Yokota, A., Development of a double-crossover markerless gene deletion system in Bifidobacterium longum: functional analysis of the α-galactosidase gene for raffinose assimilation. Appl. Environ. Microbiol. 78 (14): 4984-4994 (2012). PMID 22582061. [link to RRC of NBRP] |
Further references such as user reports and related articles (go to bottom)
Featured content
Featured content | Bacteria host strains (en) (English text) |
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Featured content | Bacteria host strains (ja) (Japanese text) |
RIKEN BRC has sequenced portions of this material for quality test.
Please review the QC test results indicated by icon as well as clone information before placing your order.
Test sheet | RDB15973_A8Fbp1-4.pdf |
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Nucleotide sequence of a portion of this resource (if available).
Primer: pBS423_seq3_4 (Pr1260) Region: insert mid(delta repA,rep B 5') Sequence file: RDB15973_A8Fbe.seq |
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>15973_15973_B2LdF_M2_pBS423_seq3_4_D01_04_ABI08.ab1 1 NNNNNNNNNN NNNNNNNNNN NNNGCTTCNC TGGGCTGANC NTCTGACTTG GTTCGGCGCA 61 CGCTTGTGCA ATGCACAAAT GTGCAATAGG ATGTGAGCTA TGAGCAACGA ATATGTGCAG 121 GGGACGCTGG AGCTGACGCG GGCGTTCGAC GGCTGGTGGC TTCCCCAGCG TCCCCTGTGC 181 TGCGACGATG ACTACTCCCA GCTGGTGCGC CGGAGCCGCA TCGACGCGCT CAGATGCAAG 241 CACATCGAGG CGAATCCGGC AGCGCAGGTG AACATGCTCG TTGTTAACGA CACCGCCAAG 301 AGCATCCACA AGTGGATCAC CACGCGAAGC CGCATGTGGC GAGACGGTGC CGTCGCCAAC 361 GCCGCCACGT TCGTCGCCAT CCAATCCGCA CGCGGAAAGA AATCGGGCGA GGCCAGACAA 421 AACGCATTTG AAGAGAAGTT CGCGCAGTAC GCGCAGGAGG TGCTTGGACA ATGACCATCC 481 AGACAATTCG CAAGAAGCGC CCATTGCCCG CCAAGGAGTT AGCCGAGGCC TATGGGGTGT 541 CCGTGCGCAC GATCAAGTAC TGGAATTCGC AAACGCGCGA GGACTGGATA GACGAGCAGG 601 CAACGTTGCG CGAATCCATC CNCGCCTACC ACGACGATGA CNGNNNNTCG TGGAGCCAGA 661 CCGCCGAACA CTTCAACATG ACCCAAGGTG CCGTGCGCCN ANNNNCCTAC CGCGCNNNNN 721 NGGAACGCGA GGCCGAGGCA AAAGCCGCAA GGNCGGANTA GCAAGTGACG TGAACNTATA 781 TACNNTTCAC TCNNNNNNNN NN // |
Primer: pTBR101CM_seq3 (Pr0560) Region: insert mid(pTB4_p1) Sequence file: RDB15973_A8Fbf.seq |
>D04829A2-14_A8Fb_pTBR101CM_seq3_B01_02_ABI08.ab1 1 NNNNNNNNNN NNNNNNNNNC GGNCTGGNNG NTCCGCCGAN CNTGGGGCAT GGGTCTTCCC 61 GGCAAGCCGA TTCGCACCGC GAATCGAGTG ATTGTAGCTA CAATCACGTC GCTTGCTACT 121 CCGGCCTTCG GCACTCGGGT TGTTGCTCCT GCGCCGAAGG GCGAGGGAGG CTGCGGGCTC 181 GGTTCATGTA CATGAACCGT CTAGCTTGCT TACCTTCGAT TTGATGGACA TCTCCATGTG 241 GATGTCCATG GAGATGTCCA TGGAGATGTC CATGGAGATG TCCATGGAGA TGTCCATGGA 301 GATGTCCATG TGGGTGTCCA TGTGGGTGTC CATGGATATA TCCATCTGAG CGCATAGGAA 361 AACGCATGAG GGTGGATGAT CGTTCGGGGT GATGCCTTCT TCCACGAACG GGAAGGGGCT 421 CTTCCTTTTT CTGGAATGTC ATCTTCCAGC GCCCTTCGCC TTGAGCTCCT TGAGCAGCAT 481 CGTCGCGTTG TCGCGGATGC TCGCGTCCGT GAGCGGGGAG AGCTCGTCCG CATAGGAGCG 541 GCAGAGGAGC GCGTACACCC GTTCCCGCAC CCAGGCGCTG CGCGCGATGC CCAGCTTGAA 601 CGCGGCCCGG CACAGCATCT CGTATTCGTC GCCGGTGAGC AGGACATTGA GCTGGCGTCA 661 AAAGTTGATT AGTCATGCCG TGTATATACG TCCGGGGTGT TTTCGGCCAG ATTCCAACAG 721 TTTTGGGCCA CTCCGGGAAN GAACAGCCGA CGCTTCGCTG GGCTGAACCA TCTGACTTGG 781 TTCGGCGCAC GCTTGTGCAA TGCACAAATG TGCAATAGGA TGTGAGCTAT GANCAACGAA 841 TATGTGCAGG GGNNGCTGGA NCTGACGCNG GCGTTCGACG GCNGGNGGCT NNCCCAGCGN 901 CCCCNNNGCT GCGNCGATGN NTACTCCNAG CNGGNGCNCC NGANCCNNNT CGACGCGCTN 961 NNNTGNNNGC ACNTCNNNNN NNANTCCNGN NNNNNNNNN // |
Primer: ColE1ori_F (Pr0393) Region: ori,insert (pTB4_p3 5') Sequence file: RDB15973_A8Fbg.seq |
>15973_15973_B2L9F_ColE1ori_F_F01_06_ABI08.ab1 1 NNNNNNNNNN NNNNNNNNNN NNCNNNTCTG NNTTGAGCGT CGATTTTTGT GATGCTCGTC 61 AGGGGGGCGG AGCCTATGGA AAAACGCCAG CAACGCGGCC TTTTTACGGT CCCTGGCCTT 121 TTGCTGGCCT TTTGCTCAGA ATTCGAGCTC GGTACCCGGG GATCCAGGTG CTTGACAGGG 181 TGATGGAGCG TCACCCAGAA CTGTCCGAGA AGGACGTGGT GACCGCGTTC CGCAGCGTCA 241 TGGTGGACGC GGAGCGCGAG TCCGGCGCGT GGATGGCGAT AGGGCTCGAC GGGCGCGGCA 301 GGAACGTCGA GATGCTGTAC AGGGTCG // |
Primer: pBS423_seq3 (Pr0559) Region: insert mid(delta repA 3',repB,pTB4_p2 3') Sequence file: RDB15973_A8Fbh.seq |
>D04829A2-14_A8Fb_pBS423_seq3_A01_01_ABI08.ab1 1 NNNNNNNNNN NNNNNNNNNG CTCGTTGTTN NNGACNCCGC CNAGAGCATC CACAAGTGGA 61 TCACCACGCG AAGCCGCATG TGGCGAGACG GTGCCGTCGC CAACGCCGCC ACGTTCGTCG 121 CCATCCAATC CGCACGCGGA AAGAAATCGG GCGAGGCCAG ACAAAACGCA TTTGAAGAGA 181 AGTTCGCGCA GTACGCGCAG GAGGTGCTTG GACAATGACC ATCCAGACAA TTCGCAAGAA 241 GCGCCCATTG CCCGCCAAGG AGTTAGCCGA GGCCTATGGG GTGTCCGTGC GCACGATCAA 301 GTACTGGAAT TCGCAAACGC GCGAGGACTG GATAGACGAG CAGGCAACGT TGCGCGAATC 361 CATCCGCGCC TACCACGACG ATGACGGCCA CTCGTGGAGC CAGACCGCCG AACACTTCAA 421 CATGACCCAA GGTGCCGTGC GCCAACGCGC CTACCGCGCC CGCAAGGAAC GCGAGGCCGA 481 GGCAAAAGCC GCAAGGCCGG AGTAGCAAGT GACGTGAACG TATATACGTT CACTCGATTC 541 GCGGTGCGAA TCGGCTTGCC GGGAAGACCC ATGCCCCATA GTCGGCAGAG CCTCCAGACC 601 GCTCACGCGG CATCGTGCCA CGACTGTGGC ACATCACGTA ACACCCGCAC ATCCTCACGG 661 TGGTGCGCGG GTGTTACGTG ATTCGAACCA TCGGCCTGAC AGGTCTCAGA TCGCTCCAGC 721 GAGCTTACGG CGCATGTACT CGCTGCGGCT GATGTGGTAC CGCCTGGCCA TCGCGGTCAG 781 ANCGTCCAGC GTGCTCTTGG GCATGCGGAC GGACACGCTG ACCATCTGCT CGNCGGGCTC 841 GGCGANATGG ANCCCGTAGT ACACGCGCCC CGTCAGGTCG TCCGGGNNNN TCTCGGANTC 901 NGCCATCCGC NCATCCTCCA NCACCNGCTC CTCNGNCAGC CCNANCAGCG CCNTCAANNG 961 NNNGNCNNNT TCGCNGAAAN TCNCNNATAN NNNNNNNNN // |
Primer: pTBR101CM_seq7 (Pr0561) Region: insert mid(repB 3',pTB4_p2,pTB4_p3 3') Sequence file: RDB15973_A8Fbi.seq |
>D04829A2-14_A8Fb_pTBR101CM_seq7_C01_03_ABI08.ab1 1 NNNNNNNNNN NNNNNNNNNC CGCGCCTACN NCNACNNNGA CGGCCNCTCG TGGNGCCAGA 61 CCGCCGAACA CTTCAACATG ACCCAAGGTG CCGTGCGCCA ACGCGCCTAC CGCGCCCGCA 121 AGGAACGCGA GGCCGAGGCA AAAGCCGCAA GGCCGGAGTA GCAAGTGACG TGAACGTATA 181 TACGTTCACT CGATTCGCGG TGCGAATCGG CTTGCCGGGA AGACCCATGC CCCATAGTCG 241 GCAGAGCCTC CAGACCGCTC ACGCGGCATC GTGCCACGAC TGTGGCACAT CACGTAACAC 301 CCGCACATCC TCACGGTGGT GCGCGGGTGT TACGTGATTC GAACCATCGG CCTGACAGGT 361 CTCAGATCGC TCCAGCGAGC TTACGGCGCA TGTACTCGCT GCGGCTGATG TGGTACCGCC 421 TGGCCATCGC GGTCAGACCG TCCAGCGTGC TCTTGGGCAT GCGGACGGAC ACGCTGACCA 481 TCTGCTCGTC GGGCTCGGCG AGATGGAGCC CGTAGTACAC GCGCCCCGTC AGGTCGTCCG 541 GGACAGTCTC GGACTCGGCC ATCCGCTCAT CCTCCAGCAC CTGCTCCTCG GTCAGCCCGA 601 CCAGCGCCAT CAACTGCCTG TCGCGTTCGC TGAAATCACT CATAGCGTCC TCCCATCGCC 661 GCGCAGACGG TCTATCTCGC GCCTGAACTT CTTGGTCGGC GGCGTGAACG CGTGGTAGAT 721 CACCACGAGG TCGCCGACGA CCCTGTACAG CATCTCGACG TTCCTGCCGC GCCCGTCGAG 781 CCCTATCGCC ATCCACGCGC CGGACTCGCG CTCCNCGTCC ACCATGACGC TGCGGAACGC 841 GGTCACCACG TCCTTCTCGG ACAGTTCTGG GGTGANGCNC CATCACCCNN NCAAGCACCN 901 NGATCCCNGG GNNNCNNNCT NNNNNTCTGA NNNAAAGGNC AGCNAAANGN CAGGGANCGN 961 NAAAANNNNC NNNTNNNNNN NNTTTTTTNC ANNNNNNNNN N // |
Please visit Sequencing and PCR primers for primer information.
Original, user report and related articles
original | Hirayama, Y., Development of a double-crossover markerless gene deletion system in Bifidobacterium longum: functional analysis of the α-galactosidase gene for raffinose assimilation. Appl. Environ. Microbiol. 78 (14): 4984-4994 (2012). PMID 22582061. [link to RRC of NBRP] |
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reference | O'Connell Motherway, M., Carbohydrate Syntrophy enhances the establishment of Bifidobacterium breve UCC2003 in the neonatal gut. Sci. Rep. 8 (1): 10627 (2018). PMID 30006512. |
reference | Nishiyama, K., Bifidobacterium bifidum Extracellular Sialidase Enhances Adhesion to the Mucosal Surface and Supports Carbohydrate Assimilation. MBio 8 (5). pii: e00928-17 (2017). PMID 28974612. |
reference | Fukiya, S., Development of practical gene-mutagenesis systems in bifidobacteria. (Japanese text) Seibutsu-kogaku 94 (3): 110-116 (2016). |
2024.03.26
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