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Please review the QC test results indicated by check icon below as well as clone information before placing your order.

pUlrTK

Genome editting tool to select aimed integration efficiently. The platform of integrative donor fragment containing acouple of tk, sucide gene, & 5UAS

Catalog number RDB19575
Resource name pUlrTK
Alternative name pUCtk2x2-UAS, pwTK5UAS
Clone info. Genome editting tool to select aimed integration efficiently. The platform of integrative donor fragment containing acouple of tk, sucide gene, & 5UAS
Vector backbone pUC19 (plasmid)
Size of vector backbone 2.7 kb
Selectable markers Ampicillin
Gene/insert name HSV tk 5' UTR, coding region, poly(A) signal.
Depositor|Developer DNA Bank, | Nakashima, Kenichi |
Other clones in our bank

External Database
HSV-1 thymidine kinase (Tk)

            Reference sequence
              
             

            Distribution information

            Please check terms and conditions set forth by the depositor, which are specified in the RIKEN BRC Catalog and/or Web Catalog.
            Terms and conditions for distribution In publishing the research results obtained by use of the BIOLOGICAL RESOURCE, a citation of literature designated by the DEPOSITOR is requested. (Nakade, K. et al., Cell Rep. Methods 3 (12): 100662 (2023))
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            提供条件 利用者は、研究成果の公表にあたって寄託者の指定する文献を引用する (Nakade, K. et al., Cell Rep. Methods 3 (12): 100662 (2023))。
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            提供依頼書 [Word]
            提供同意書 (MTA, 非営利学術目的用)[Word]
            手続きの概要は、「提供申込みについて[link]」をご覧ください。営利目的利用についてはお問い合わせください。

            Catalog # Resource name Shipping form Fee (non-profit org.)
            RDB19575 pUlrTK DNA solution

            Please review the QC test results indicated by check icon below as well as clone information before placing your order.

            How to cite this biological resource

            Materials & Methods section:

            The pUlrTK was provided by the RIKEN BRC through the National BioResource Project of the MEXT, Japan (cat. RDB19575).

            Reference section:

            Nakade, K., Tsukamoto, S., Nakashima, K., An, Y., Sato, I., Li, J., Shimoda, Y., Hemmi, Y., Miwa, Y., Hayashi, Y., Efficient selection of knocked-in pluripotent stem cells using a dual cassette cellular elimination system. Cell Rep. Methods 3 (12): 100662 (2023). PMID 38086384. [link to RRC of NBRP]

            Further references such as user reports and related articles (go to bottom)


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            QC test results

            RIKEN BRC has sequenced portions of this material for quality test.
            Please review the QC test results indicated by check icon as well as clone information before placing your order.

            Test sheet RDB19575_B2Ddp1-1.pdf check

            Nucleotide sequence of a portion of this resource (if available).

            Primer: ColE1ori_F (pr 393)
            Region: ori, mini CMV pro.1,HSV TK.1 5'
            Sequence file: RDB19575_B2Dda.seq check
            >D08799_A9_1_B2Dd_ColE1ori_F_B01_04_ABI24.ab1
                1 NNNNNNNNNN NNNNNGNNNN NNNNNNNGNN NTGNNCNTCG ATTTTTGTGA TGCTCGTCAG
               61 GGGGGCGGAG CCTATGGAAA AACGCCAGCA TATGAATTCA GTAGGCGTGT ACGGTGGGAG
              121 GTCTATATAA GCAGAGCTCG TTTAGTGAAC CGTCAGATCG CCTGGAGACG CCATCCACGC
              181 TGTTTTGACC TCCATAGAAG ACACCGGGAC CGATCCAGCC TCCGCGGCCC CGAATTCCGG
              241 GGATCGATCT TGGTGGCGTG AAACTCCCGC ACCTCTTCGG CAAGCGCCTT GTAGAAGCGC
              301 GTATGGCTTC GTACCCCTGC CATCAACACG CGTCTGCGTT CGACCAGGCT GCGCGTTCTC
              361 GCGGCCATAG CAACCGACGT ACGGCGTTGC GCCCTCGCCG GCAGCAAGAA GCCACGGAAG
              421 TCCGCCTGGA GCAGAAAATG CCCACGCTAC TGCGGGTTTA TATAGACGGT CCTCACGGGA
              481 TGGGGAAAAC CACCACCACG CAACTGCTGG TGGCCCTGGG TTCGCGCGAC GATATCGTCT
              541 ACGTACCCGA GCCGATGACT TACTGGCAGG TGCTGGGGGC TTCCGAGACA ATCGCGAACA
              601 TCTACACCAC ACAACACCGC CTCGACCAGG GTGAGATATC GGCCGGGGAC GCGGCGGTGG
              661 TAATGACAAG CGCCCAGATA ACAATGGGCA TGCCTTATGC CGTGACCGAC GCCGTTCTGG
              721 CTCCTCATAT CGGGGGGGAG GCTGGGAGCT CACATGCCCC GCCCCCGGCC CTCACCCTCA
              781 TCTTCGANCG CCNTCCCATN NNCGCCCTCC TGTGCTACCC GGCCGCGCGA TACCTTATGG
              841 GCAGCATGAN CCCCCANGCC GTGCTGGCGN TCGTGGNCCT CATCCCGNNN ANNTTGCCCN
              901 GNACANNNTN GTGTTGGGGG NCCTTNNNGN NNNNANANNC ATCNACCGCC TGGCCAAACG
              961 CCAGCNCCCC NGNNNANCNG NTTGACNNGG NNNNNCNGGN NNCNATTCNN NNNNTTTANN
            1021 NNCNNNNTNN NNNTNNNGNN NNNNATNNNN NNNGNNNNNG NNNNNNNNNN
            //
            Primer: phRLR1 (pr 219)
            Region: AmpR pro,HSV TK pA.2,HSV TK.2 3'
            Sequence file: RDB19575_B2Ddb.seq check
            >D08799_A9_1_B2Dd_phRLR1_C01_07_ABI24.ab1
                1 NNNNNNNNNN NNNNNNNNNN TTTGATGTAT TTAGAAAAAT AAACAAATAG GGGTTCCGCG
               61 CACATTTCCC CGAAAAGTGC CACCTGACGT CTAAGAAACC ATTATTATCA TGACATTAAC
              121 CTATAAAAAT AGGCGTATCA CGAGGCCCTT TCGTCTCGCG CGTTTCGGTG ATGACGGTGA
              181 AAACCTCTGA CACATGCAGC TCCCGGCTAT AGGAACAAAC GACCCAACAC CCGTGCGTTT
              241 TATTCTGTCT TTTTATTGCC GTCATAGCGC GGGTTCCTTC CGGTATTGTC TCCTTCCGTG
              301 TTTCAGTTAG CCTCCCCCAT CTCCCGGGCA AACGTGCGCG CCAGGTCGCA GATCGTCGGT
              361 ATGGAGCCGG GGGTGGTGAC GTGGGTCTGG ACCATCCCGG AGGTAAGTTG CAGCAGGGCG
              421 TCCCGGCAGC CGGCGGGCGA TTGGTCGTAA TCCAGGATAA AGACGTGCAT GGGACGGAGG
              481 CGTTTGGCCA AGACGTCCAA GGCCCAGGCA AACACGTTGT ACAGGTCGCC GTTGGGGGCC
              541 AGCAACTCGG GGGCCCGAAA CAGGGTAAAT AACGTGTCCC CGATATGGGG TCGTGGGCCC
              601 GCGTTGCTCT GGGGCTCGGC ACCCTGGGGC GGCACGGCCG TCCCCGAAAG CTGTCCCCAA
              661 TCCTCCCGCC ACGACCCGCC GCCCTGCAGA TACCGCACCG TATTGGCAAG CAGCCCGTAA
              721 ACGCGGCGAA TCGCGGCCAG CATAGCCAGG TCAAGCCGCT CGCCGGGGCG CTGGCGTTTG
              781 GNCAGGCGGT CGATGTGTCT GTCNTCCGGA AGGGNCNNCA ACACGATGTT TGTGCCGGGC
              841 AANGTCGGCG GGATGAGGGC CACGAACGCC AGCACGGCCT GGGGGGTCAT GCTGCCCATA
              901 AGGNATCGCG CGGNCNNGNN AGCACAGGAN GGNGGNNATG GGNNGGCGGT CNAANANNAN
              961 GGTGANGGNC GGGGGCGGGG NATGTNANCT CCCANNNNCC CCCCNNATNT GAGGNNNNNN
            1021 NNNN
            //
            Primer: M13fwd (pr 349)
            Region: HSV TK pA.1,HSV TK.1 3'
            Sequence file: RDB19575_B2Ddc.seq check
            >D08799_A9_1_B2Dd_M13fwd_D01_10_ABI24.ab1
                1 NNNNNNNNNN NNNNNNNNAC CNNANNCCCG TGCGTTTTAT TCTGTCTTTT TATTGCCGTC
               61 ATAGCGCGGG TTCCTTCCGG TATTGTCTCC TTCCGTGTTT CAGTTAGCCT CCCCCATCTC
              121 CCTGGCAAAC GTGCGCGCCA GGTCGCAGAT CGTCGGTATG GAGCCGGGGG TGGTGACGTG
              181 GGTCTGGACC ATCCCGGAGG TAAGTTGCAG CAGGGCGTCC CGGCAGCCGG CGGGCGATTG
              241 GTCGTAATCC AGGATAAAGA CGTGCATGGG ACGGAGGCGT TTGGCCAAGA CGTCCAAGGC
              301 CCAGGCAAAC ACGTTGTACA GGTCGCCGTT GGGGGCCAGC AACTCGGGGG CCCGAAACAG
              361 GGTAAATAAC GTGTCCCCGA TATGGGGTCG TGGGCCCGCG TTGCTCTGGG GCTCGGCACC
              421 CTGGGGCGGC ACGGCCGTCC CCGAAAGCTG TCCCCAATCC TCCCGCCACG ACCCGCCGCC
              481 CTGCAGATAC CGCACCGTAT TGGCAAGCAG CCCGTAAACG CGGCGAATCG CGGCCAGCAT
              541 AGCCAGGTCA AGCCGCTCGC CGGGGCGCTG GCGTTTGGCC AGGCGGTCGA TGTGTCTGTC
              601 CTCCGGAAGG GCCCCCAACA CGATGTTTGT GCCGGGCAAG GTCGGCGGGA TGAGGGCCAC
              661 GAACGCCAGC ACGGCCTGGG GGGTCATGCT GCCCATAAGG TATCGCGCGG CCGGGTAGCA
              721 CAGGAGGGCG GCGATGGGAT GGCGGTCGAA GATGAGGGTG AGGGCCGGGG GCGGGNNNTG
              781 TGAGCTCCCA GCCTCCCCCC CGATATGAGG AGCCAGAACG GCGTCNGTCA CGGCATAAGG
              841 CATGCCCATT GTTATCTGGG CGCTTGTCAT TACCACCGCC GCGTCCCCGG CCGATATCTC
              901 ACCCTGGTCG ANGCGGTGTT GTGTGGNGTA GANGTTCGCG NNNGTCTCNG NANNCCCCCA
              961 NCACCTGNCA GTAAGTCATC NGNNCGGGNA NGTAGNNNAN ATCGNNNCNC NNNCCCNNGG
            1021 NNNNCNNCAN NNNNNNNGNN NGNNNNNTNN NNNNNNNCNN NNNGNNNNNN NNNN
            //
            Primer: M13Fwd_R (pr 581)
            Region: mini CMV pro.2,HSV TK.2 5'
            Sequence file: RDB19575_B2Ddd.seq check
            >D08799_A9_1_B2Dd_M13Fwd_R_E01_13_ABI24.ab1
                1 NNNNNNNNNG NNNNNGGNGG GNNGNCTATA TAAGCAGAGC TCGTTTAGTG AACCGTCAGA
               61 TCGCCTGGAG ACGCCATCCA CGCTGTTTTG ACCTCCATAG AAGACACCGG GACCGATCCA
              121 GCCTCCGCGG CCCCGAATTC CGGGGATCGA TCTTGGTGGC GTGAAACTCC CGCACCTCTT
              181 CGGCAAGCGC CTTGTAGAAG CGCGTATGGC TTCGTACCCC TGCCATCAAC ACGCGTCTGC
              241 GTTCGACCAG GCTGCGCGTT CTCGCGGCCA TAGCAACCGA CGTACGGCGT TGCGCCCTCG
              301 CCGGCAGCAA GAAGCCACGG AAGTCCGCCT GGAGCAGAAA ATGCCCACGC TACTGCGGGT
              361 TTATATAGAC GGTCCTCACG GGATGGGGAA AACCACCACC ACGCAACTGC TGGTGGCCCT
              421 GGGTTCGCGC GACGATATCG TCTACGTACC CGAGCCGATG ACTTACTGGC AGGTGCTGGG
              481 GGCTTCCGAG ACAATCGCGA ACATCTACAC CACACAACAC CGCCTCGACC AGGGTGAGAT
              541 ATCGGCCGGG GACGCGGCGG TGGTAATGAC AAGCGCCCAG ATAACAATGG GCATGCCTTA
              601 TGCCGTGACC GACGCCGTTC TGGCTCCTCA TATCGGGGGG GAGGCTGGGA GCTCACATGC
              661 CCCGCCCCCG GCCCTCACCC TCATCTTCGA CCGCCATCCC ATCGCCGCCC TCCTGTGCTA
              721 CCCGGCCGCG CGATACCTTA TGGGCAGCAT GACCCCCCAG GCCGTGCTGG CGTTCGTGGC
              781 CCTCATCCCG CCGACCTTGC CCGGCACAAA CATCGTGTTG GGGGNCCTTC CGGANGACAG
              841 ACACATCGNC CGCCTGGCCA AACGCCAGCG CCCCGGCGAG CGGCTTGACC TGGCTATGCT
              901 GGNCGCGATT CGCCGCGTTT ANNGNNTGCT TGNCNNTNCN GNGCGGNNTC TGCAGGGCGG
            961 NGGGTCNNNG NGGGANNNNT GGGNNNAGCT TTNNGGGNNN NNNNNNN
            //
            Primer: rTKOutRev (pr 1236)
            Region: HSV TK pA.2,HSV TK.2 3'
            Sequence file: RDB19575_B2Dde.seq check
            >D08799A9_B2Dd_1_rTKOut_Rev_H08_23_ABI24
                1 NNNNNNNNNN NNNNNNTTNN NTCTGTCTTT TNNTTGCCGT CATAGCGCGG GTTCCTTCCG
               61 GTATTGTCTC CTTCCGTGTT TCAGTTAGCC TCCCCCATCT CCCGGGCAAA CGTGCGCGCC
              121 AGGTCGCAGA TCGTCGGTAT GGAGCCGGGG GTGGTGACGT GGGTCTGGAC CATCCCGGAG
              181 GTAAGTTGCA GCAGGGCGTC CCGGCAGCCG GCGGGCGATT GGTCGTAATC CAGGATAAAG
              241 ACGTGCATGG GACGGAGGCG TTTGGCCAAG ACGTCCAAGG CCCAGGCAAA CACGTTGTAC
              301 AGGTCGCCGT TGGGGGCCAG CAACTCGGGG GCCCGAAACA GGGTAAATAA CGTGTCCCCG
              361 ATATGGGGTC GTGGGCCCGC GTTGCTCTGG GGCTCGGCAC CCTGGGGCGG CACGGCCGTC
              421 CCCGAAAGCT GTCCCCAATC CTCCCGCCAC GACCCGCCGC CCTGCAGATA CCGCACCGTA
              481 TTGGCAAGCA GCCCGTAAAC GCGGCGAATC GCGGCCAGCA TAGCCAGGTC AAGCCGCTCG
              541 CCGGGGCGCT GGCGTTTGGC CAGGCGGTCG ATGTGTCTGT CCTCCGGAAG GGCCCCCAAC
              601 ACGATGTTTG TGCCGGGCAA GGTCGGCGGG ATGAGGGCCA CGAACGCCAG CACGGCCTGG
              661 GGGGTCATGC TGCCCATAAG GTATCGCGCG GCCGGGTAGC ACAGGAGGGC GGCGATGGGA
              721 TGGCGGTCGA AGATGAGGGT GAGGGCCGGG GGCGGGGCAT GTGAGCTCCC AGCCTCCCCC
              781 CCGATATGAG GAGCCAGAAC GGCGTCNGTC ACGGCATAAN GCATGCCCAT TGTTATCTGG
              841 GCGCTTGTCA TTACCACCGC CNCGTCCCCN GCCGANATCT CACCCTGNTC GANGCGGTGT
              901 TGTGTGGTGT AGANGTTCGC GANTGTCTCG NANNNCCCCA GCNNNTGCNN NNAANTCNTC
              961 GGNTCNGGTA CNTANANNAN NTCNNCNNNC NNANCNNNNG GNCNNCANNA GTTGNNNGNN
            1021 GGNNNGNTTT NCCCNTNCCN NNNNGNNCNN TNNNTNTAAN CNNNNNNNNN N
            //
            Primer: AmpR_F (pr 962)
            Region: AmpR,5xUAS,ori
            Sequence file: RDB19575_B2Ddf.seq check
            >D08799_A9_1_B2Dd _AmpR_F_A01_01_ABI24.ab1
                1 NNNNNNNNNN NNNNNNGNNN GNNCGCTGAG NNAGGTGCCT CACTGATTAA GCATTGGTAA
               61 CTGTCAGACC AAGTTTACTC ATATATACTT TAGATTGATT TAAAACTTCA TTTTTAATTT
              121 AAAAGGATCT AGGTGAAGAT CCTTTTTGAT AATCTCATGA CCAAAATCCC TTAACGTGAG
              181 TTTTCGTTCC ACTGAGCGTC ACTGCAGGTC GATCGACGGA TCGGAGTACT GTCCTCCGAG
              241 CGGAGTACTG TCCTCGAGCG GAGTACTGTC CTCCGAGCGG AGTACTGTCC TCCGAGCGGA
              301 GTACTGTCCT CCGAGGACCC CGTAGAAAAG ATCAAAGGAT CTTCTTGAGA TCCTTTTTTT
              361 CTGCGCGTAA TCTGCTGCTT GCAAACAAAA AAACCACCGC TACCAGCGGT GGTTTGTTTG
              421 CCGGATCAAG AGCTACCAAC TCTTTTTCCG AAGGTAACTG GCTTCAGCAG AGCGCAGATA
              481 CCAAATACTG TTCTTCTAGT GTAGCCGTAG TTAGGCCACC ACTTCAAGAA CTCTGTAGCA
              541 CCGCCTACAT ACCTCGCTCT GCTAATCCTG TTACCAGTGG CTGCTGCCAG TGGCGATAAG
              601 TCGTGTCTTA CCGGGTTGGA CTCAAGACGA TAGTTACCGG ATAAGGCGCA GCGGTCGGGC
              661 TGAACGGGGG GTTCGTGCAC ACAGCCCAGC TTGGAGCGAA CGACCTACAC CGAACTGAGA
              721 TACCTACAGC GTGAGCTATG AGAAAGCGCC ACGCTTCCCG AAGGGAGAAA GGCGGACAGG
              781 TATCCGGTAA GCGGCAGGGT CGGAACAGGA GAGCGCACGA GGGAGCTTCC AGGGGGAAAC
              841 GCCTGGTATC TTTATAGTCC TGTCGGGNTT CGCCNCCTCT GACTTGAGCG TCGATTTTTN
              901 TGANGCTCGT CANGGGGGNG GANCCTATNG AAAAACGCCN GCATATGAAN TCNGTNNNNG
              961 TGNACNNNGG GAGGNCTATA TNAGCAGANC TCGTTTANTG NNNNNNCNNN TNNNNNNNNN
            1021 N
            //

            Please visit Sequencing and PCR primers for primer information.


            References

            Original, user report and related articles

            original Nakade, K., Efficient selection of knocked-in pluripotent stem cells using a dual cassette cellular elimination system. Cell Rep. Methods 3 (12): 100662 (2023). PMID 38086384. [link to RRC of NBRP]

            2024.04.04

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