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pcDNA5-GAPDH-HaloTag (#RDB15088)

Expression vector for the visualization of chaperone-mediated autophagy (CMA).

Alternative name GAPDH-HT/pcDNA5/FRT
Clone info. Expression vector of human glyceraldehyde 3-phosphate dehydrogenase (GAPDH), tagged with C-terminal HaloTag, for genomic integration. Translocation of the GAPDH-HT labeled with an appropriate fluorescent dye as a substrate of chaperone-mediated autophagy (CMA) from cytosol to lysosome can be detected. Refer Fig. 1 of Seki, T., et al., PLoS ONE 7 (2), e31232, 2012.
Comment Expression was confirmed by the depositor with immunostaining.
Vector backbone pcDNA5/FRT (Plasmid)
Size of vector backbone 5.1 kb
Selectable markers Amp^r (E. coli), Hyg^r (mammalian cells).
Growth conditions LB+Amp, 37oC
Gene/insert name Human GAPDH cDNA
Depositor|Developer Seki, Takahiro |
 

Distribution information

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MTA, for use for not-for-profit academic purpose [Word] [Example of MTA ]
Please visit Information of Request for Distribution.[link] 
Terms and conditions for distribution In publishing the research results obtained by use of the BIOLOGICAL RESOURCE, a citation of literature designated by the DEPOSITOR is requested (Sato, M. et al. Genes Cells 21 (8): 861-873, 2016).
Additional terms and conditions:
The use of the BIOLOGICAL RESOURCE is restricted to the academic researches conducted by non-profit organization. By using this material, the RECIPIENT agrees to be bound by the conditions of the limited use statement of the Promega Corporation.
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必要書類
提供依頼書  [依頼書の記入例 ]
提供同意書 (MTA, 非営利学術目的用)[Word] [MTAの記入例 ]
手続きの概要は、「提供申込みについて[link]」をご覧ください。
MTAに書く使用条件 利用者は、研究成果の公表にあたって寄託者の指定する文献を引用する (Sato, M. et al. Genes Cells 21 (8): 861-873, 2016)。
MTAに書く付加的使用条件:
本件リソースの使用は学術機関での学術研究に限る。本件リソースの使用にあたって、利用者はプロメガ社の限定使用条件に従う必要がある。

Catalog # Resource name Shipping form Fee (non-profit org.)
RDB15088 pcDNA5-GAPDH-HaloTag DNA solution JPY 9,460 (not-for-profit academic purpose)
plus cost of shipping containers, dry ice (if required) and shipping charge

Please review the QC test results indicated by check icon below as well as clone information before placing your order.

How to cite this biological resource

Materials & Methods section:

The pcDNA5-GAPDH-HaloTag was provided by the RIKEN BRC through the National BioResource Project of the MEXT, Japan (cat. RDB15088).

Reference section:

Sato, M., Seki, T., Konno, A., Hirai, H., Kurauchi, Y., Hisatsune, A., Katsuki, H., Fluorescent-based evaluation of chaperone-mediated autophagy and microautophagy activities in cultured cells. Genes Cells 21 (8): 861-873 (2016). PMID 27377049. [link to RRC of NBRP]
Seki,T., Yoshino, K.I., Tanaka, S., Dohi, E., Onji, T., Yamamoto, K., Hide, I., Paulson, H.L., Saito, N., Sakai, N., Establishment of a novel fluorescence-based method to evaluate chaperone-mediated autophagy in a single neuron. PLoS One 7 (2): e31232 (2012). PMID 22363588. [link to RRC of NBRP]

Further references such as user reports and related articles (go to bottom)


QC test results

RIKEN BRC has sequenced portions of this material for quality test.
Please review the QC test results indicated by check icon as well as clone information before placing your order.

Test sheet RDB15088_A7F8p1-3.pdf check

Nucleotide sequence of a portion of this resource (if available).

Primer: CMV_Forward (Pr0016)
Region: CMV pro,T7 pro,insert 5'(hGAPDH 5')
Sequence file: RDB15088_A7F8a.seq check
>D04515A1_A7F8-1_CMV-Forward_A09_01_ABI08.ab1
    1 ATTTTCACTT CCGCCCCATT GACGCAAATG GGCGGTAGGC GTGTACGGTG GGAGGTCTAT
   61 ATAAGCAGAG CTCTCTGGCT AACTAGAGAA CCCACTGCTT ACTGGCTTAT CGAAATTAAT
  121 ACGACTCACT ATAGGGAGAC CCAAGCTGGC TAGCGTTTAA ACTTAAGCTT GGTACCGAGC
  181 TCGGATCCAC TAGTCCAGTG TGGTGGAATT CTGCAGATAT CACCATGGGG AAGGTGAAGG
  241 TCGGAGTCAA CGGATTTGGT CGTATTGGGC GCCTGGTCAC CAGGGCTGCT TTTAACTCTG
  301 GTAAAGTGGA TATTGTTGCC ATCAATGACC CCTTCATTGA CCTCAACTAC ATGGTTTACA
  361 TGTTCCAATA TGATTCCACC CATGGCAAAT TCCATGGCAC CGTCAAGGCT GAGAACGGGA
  421 AGCTTGTCAT CAATGGAAAT CCCATCACCA TCTTCCAGGA GCGAGATCCC TCCAAAATCA
  481 AGTGGGGCGA TGCTGGCGCT GAGTACGTCG TGGAGTCCAC TGGCGTCTTC ACCACCATGG
  541 AGAAGGCTGG GGCTCATTTG CAGGGGGGAG CCAAAAGGGT CATCATCTCT GCCCCCTCTG
  601 CTGATGCCCC CATGTTCGTC ATGGGTGTGA ACCATGAGAA GTATGACAAC AGCCTCAAGA
  661 TCATCAGCAA TGCCTCCTGC ACCACCAACT GCTTAGCACC CCTGGCCAAG GTCATCCATG
  721 ACAACTTTGG TATCGTGGAA GGACTCATGA CCACAGTCCA TGCCATCACT GCCACCCAGA
  781 AGACTGTGGA TGGCCCCTCC GGGAAACTGT GGCGTGATGG CCGCGGGGCT CTCCAGAACA
  841 TCATCCCTGC CTCTACTGGC GCTGCCAAGG CTGTGGGCAA AGGTCATCCC TGAGCTGAAC
  901 GGGAAGCTCA CTGGCATGGC CTTCCGTGTC CCCACTGCCA ACGTGTCAGT GGGTGGACCT
  961 GACCTGCCGT CTAGAAAACC CTGGCCCAAT ATGATGACAT CAAGAAAGTT GTGGAGCAGC
 1021 GTCGGAGGAC CCCTTCAAGG CATCCTTGGC TACACTGAGC ACAGATGATC TCCTCTGACC
1081 TTC
//
Primer: HaloTag-N_R (Pr0492)
Region: insert mid(HaloTag,TEV site,hGPDH 3')
Sequence file: RDB15088_A7F8b.seq check
>D04515A1_A7F8-1_HaloTag-N_R_B09_02_ABI08.ab1
    1 ATAGCATCAT ATGGGGGTCG ATGGAAGCCA GTACCGATTT CGGATCCATC GTTATCGCTC
   61 TGAAAGTACA GATCCTCAGT GGTTGGCTCG AGAGCTCGAG ATCCCTCCTT GGAGGCCATG
  121 TGGGCCATGA GGTCCACCAC CCTGTTGCTG TAGCCAAATT CGTTGTCATA CCAGGAAATG
  181 AGCTTGACAA AGTGGTCGTT GAGGGCAATG CCAGCCCCAG CGTCAAAGGT GGAGGAGTGG
  241 GTGTCGCTGT TGAAGTCAGA GGAGACCACC TGGTGCTCAG TGTAGCCCAG GATGCCCTTG
  301 AGGGGGCCCT CCGACGCCTG CTTCACCACC TTCTTGATGT CATCATATTT GGCAGGTTTT
  361 TCTAGACGGC AGGTCAGGTC CACCACTGAC ACGTTGGCAG TGGGGACACG GAAGGCCATG
  421 CCAGTGAGCT TCCCGTTCAG CTCAGGGATG ACCTTGCCCA CAGCCTTGGC AGCGCCAGTA
  481 GAGGCAGGGA TGATGTTCTG GAGAGCCCCG CGGCCATCAC GCCACAGTTT CCCGGAGGGG
  541 CCATCCACAG TCTTCTGGGT GGCAGTGATG GCATGGACTG TGGTCATGAG TCCTTCCACG
  601 ATACCAAAGT TGTCATGGAT GACCTTGGCC AGGGGTGCTA AGCAGTTGGT GGTGCAGGAG
  661 GCATTGCTGA TGATCTTGAG GCTGTTGTCA TACTTCTCAT GGTTCACACC CATGACGAAC
  721 ATGGGGGCAT CAGCAGAGGG GGCAGAGATG ATGACCCTTT TGGCTCCCCC CTGCAAATGA
  781 GCCCCAGCCT TCTCCATGGT GGTGAAGACG CCAGTGGACT CCACGACGTA CTCAGCGCCA
  841 GCATCGCCCC ACTTGATTTT GGAGGGGATC TCGCTCCTGG AAAGATGGTG ATGGGGATTT
  901 CCATTGATGA CAAGCTTTCC CGTTTCTCAG CCCTTGACGG TGCCATGGGA AATTTGCCCA
  961 TGGGTGGGAA TCATATTTGG GAACATGTAA ACCCATGTAG TTTGAGGTTC CATTGAGGGG
 1021 TCATTGATGG CCACCATATC AACTTACCAG AGTAAAAGGC CAGCCCCTTG GGTTGACCAG
1081 GGACGC
//
Primer: BGH_rev2 (Pr0606)
Region: bGHpA,insert 3'(HaloTag 3')
Sequence file: RDB15088_A7F8c.seq check
>D04515A1_A7F8-1_BGH_rev2_C09_03_ABI08.ab1
    1 CATTAGGGTT CGGGAGGCAC GGGGGAGGGG CAAACAACAG ATGGCTGGCA ACTAGAAGGC
   61 ACAGTCGAGG CTGATCAGCG GGTTTAAACG GGCCCTCTAG ACTCGAGCGG CCGCCCCAAG
  121 GGGTTATGCT AGTTATTGCT CAGCGGTGGC AGCAGCCAAC TCAGCTTCCT TTCGGGCTTT
  181 GTTAGCAGCC GGATCAGCTT GCATGCCTGC AGGTCGACTC TAGAATTCTA TTAACCGGAA
  241 ATCTCCAGAG TAGACAGCCA GCGCGCGATC TCGCTGCCGA TCAGGTCCGG GTTGTCTTCT
  301 TGCAGCAGAT TCAGACCCGG GCCGATGTCC ACAGCCTTGC AGTTAGGCAG GCTTTTGGCC
  361 AGGCGAGCGG CTTCGGCCGG TGGGATCAGA ACGCCTGGGG TGCCCCAGAA CAGCAGCTTC
  421 GGGACAGGGG ACTGGTGCAG CCAGTCCATG TATTCTTCGA CCAGCGCGAC GATGTTCGCT
  481 GGCTCACCGG CGATTGGCAG CTCGTTTGGG AAGCGCCACA GTGGCTCGCG GTCAACAGGA
  541 TTCAGGAACG GCTCGCGGTA ATGGTCCATC TCGACTTCAG TCAGCGGGCG GACGACACCC
  601 ATCGGCAGCG TACCCTCGAT AAAAACGTTC TGATCGATGA TCAGCTTGCG GCCGACGTCG
  661 GTGGTGCGGA AGGCCTGGAA GGTCTCGCGG GCAAATTCTG GCCATTCGTC CCAGGTCGGG
  721 ATAGGGCGGA TGAACTCCAT AAATGCAATA CCTTTGACGC GCTCTGGATT GCGCTTGGCC
  781 CAGTGGAAAC CCAGAGCGGA GCCCCAGTCG TGAATGACCA GGACGACCTC TTCCAGACCC
  841 AGGGCTTCGA TGAAGGCATC CATGAAGCGG ACGTGGTCGT CGAAGAAATA ACCCAGGGTC
  901 TGGTTTGTCG GATTTGCCCA TACCGATCAG GTCTGGGAGC AATGCAGCGA TGGGTCGGTG
  961 CACATGCGGG ATGATGTTGC GCCACACGTA GAGGAGGTCG GGTTACCCGT GCCAGACAGC
 1021 ACAGGGTGCA ATCGCGCGGA ACAACATCGA CGTAGTGCAT GCGCTCGCCA GGAACTTCCG
1081 ACATAA
//

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References

Original, user report and related articles

original Sato, M., Fluorescent-based evaluation of chaperone-mediated autophagy and microautophagy activities in cultured cells. Genes Cells 21 (8): 861-873 (2016). PMID 27377049. [link to RRC of NBRP]
original Seki,T., Establishment of a novel fluorescence-based method to evaluate chaperone-mediated autophagy in a single neuron. PLoS One 7 (2): e31232 (2012). PMID 22363588. [link to RRC of NBRP]