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CSII-EF-mRFP1-RfA

Backbone vector plasmid of shRNA expressing lentivirus construct by Gateway(R) cloning with mRFP1 marker driven by EF-1 alpha promoter.

Catalog number RDB12128
Resource name CSII-EF-mRFP1-RfA
Clone info. Backbone vector plasmid of shRNA expressing lentivirus construct by Gateway(R) cloning with mRFP1 marker driven by EF-1 alpha promoter.
Comment Commonly requested with pENTR4-H1 (RDB04395) for generation of shRNA expression vector and with pCMV-VSV-G-RSV-Rev (RDB04393) and pCAG-HIVgp (RDB04394) for packaging. Please note that Zeo resistance marker is not included in the lentivirus produced from this vector.
Selectable markers Please note that Zeo resistance marker is not included in the lentivirus produced from this vector. E. coli: Amp^r, Cm^r, ccdB.
Growth remarks Use DB3.1, ccdB Survival or equivalent to amplify this clone. 30 degC is fine.
Depositor|Developer Miyoshi, Hiroyuki |
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External Database

            Reference sequence
              
             
            Sequence RDB12128z.seq
            Remarks, protocol and/or map (pdf) RDB12128.pdf
            Lentiviral plasmid list. [link]

            Distribution information

            Please check terms and conditions set forth by the depositor, which are specified in the RIKEN BRC Catalog and/or Web Catalog.
            Terms and conditions for distribution The availability of the BIOLOGICAL RESOURCE is limited to a RECIPIENT of a not-for profit institution for a not-for-profit academic purpose. The RECIPIENT agrees to expressly describe the late Dr. Hiroyuki Miyoshi as the Developer.
            Ordering Please visit Ordering instruction.[link] 
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            Material Transfer Agreement (MTA, for use for not-for-profit academic purpose)[Word]
            Remarks Remember that you will be working with samples containing infectious virus.
            Use Survival2 (Invitrogen) or equivalent to amplify this clone.
            This RESOURCE contains a fluorescent protein provided by Prof. Roger Tsien. UCSD's MTA is also required. Please visit Additional Forms section. This RESOURCE is not provided to for-profit organization or for for-profit research by non-profit organizations.
            提供案内 (日本国内) [open/close]

            提供条件 本件研究材料は、非営利機関の非営利学術研究に限って提供する。本件研究材料を利用した研究結果等を発表する際は、本件研究材料が故三好浩之博士により開発されたことを明示する。
            提供依頼 手続きの詳細は、「レンチウイルスベクターの提供申し込み」をご覧ください。
            提供依頼書 [Word]
            提供同意書 (非営利機関による非営利学術研究用)[Word]
            遺伝子組換え生物の受入れ確認書が必要です。当室にご請求ください。
            備考 このリソースはウイルス粒子産生用のため、取扱いに注意が必要です。
            このクローンの増殖にはSurvival2 (Invitrogen)あるいは同等の宿主を使用してください。
            Prof. Roger Tsienから供与された蛍光タンパク質を含みます。UCSDとのMTA締結が必要です。「申込みに必要な書式」をご覧ください。本件リソースは営利機関および非営利機関による営利目的研究には提供いたしません。

            Catalog # Resource name Shipping form Fee (non-profit org.)
            RDB12128 CSII-EF-mRFP1-RfA DNA solution

            Ordering instruction of plasmids [in Japanese] [in English]
            Please review the QC test results indicated by check icon below as well as clone information before placing your order.

            How to cite this biological resource

            Materials & Methods section:

            The CSII-EF-mRFP1-RfA was provided by the RIKEN BRC through the National BioResource Project of the MEXT, Japan (cat. RDB12128).

            Reference section:

            Further references such as user reports and related articles (go to bottom)


            References and tips

            Featured content

            Featured content Lentivirus Vector (English text)
            Featured content Lentivirus Vector (Japanese text)

            QC test results

            RIKEN BRC has sequenced portions of this material for quality test.
            Please review the QC test results indicated by check icon as well as clone information before placing your order.

            Test sheet RDB12128_A3Eop1-2.pdf check

            Nucleotide sequence of a portion of this resource (if available).

            Primer: EF1a-C_F (Pr0168)
            Region: EF1 alpha pro,mRFP1 5'
            Sequence file: RDB12128_A3Eoa.seq check
            >12128_12128_B1CoF_EF1a_C_F_A01_01_ABI08.ab1
                1 NNNNNNNNNN NNNTTTNANT TTGGNNCTTG GTTNNTTCTN NAGCCTCAGA CAGTGGTTCA
               61 AAGTTTTTTT CTTCCATTTC AGGTGTCGTG AACACGCTAC CGGTCTCGAC TGGATCCGAT
              121 GGCCTCCTCC GAGGACGTCA TCAAGGAGTT CATGCGCTTC AAGGTGCGCA TGGAGGGCTC
              181 CGTGAACGGC CACGAGTTCG AGATCGAGGG CGAGGGCGAG GGCCGCCCCT ACGAGGGCAC
              241 CCAGACCGCC AAGCTGAAGG TGACCAAGGG CGGCCCCCTG CCCTTCGCCT GGGACATCCT
              301 GTCCCCTCAG TTCCAGTACG GCTCCAAGGC CTACGTGAAG CACCCCGCCG ACATCCCCGA
              361 CTACTTGAAG CTGTCCTTCC CCGAGGGCTT CAAGTGGGAG CGCGTGATGA ACTTCGAGGA
              421 CGGCGGCGTG GTGACCGTGA CCCAGGACTC CTCCCTGCAG GACGGCGAGT TCATCTACAA
              481 GGTGAAGCTG CGCGGCACCA ACTTCCCCTC CGACGGCCCC GTAATGCAGA AGAAGACCAT
              541 GGGCTGGGAG GCCTCCACCG AGCGGATGTA CCCCGAGGAC GGCGCCCTGA ANGNCGAGAT
              601 CNAGATGANG NTGAAGCTGA AGGANGGCNG CCACTACGAC GCCNANGTCN AGANCACCTA
              661 CATGGNCNAN AAGCCCGTGN NGCTGNCNNG CNCNTANANA NNGANNTCNN GCNGGNNNTC
            721 NNNNCNNNNN NNNNN
            //
            Primer: Cm_N_rev (Pr0014)
            Region: RfA(CmR,attR1),PRE
            Sequence file: RDB12128_A3Eob.seq check
            >12128_12128_B1CoF_Cm_N_rev_C01_03_ABI08.ab1
                1 NNNNNNNNNN NNNNNNNNNN NNNNANGCNN TTGGGNNATA TCAACNNGTG GTATATCCNG
               61 TGATTTTTTT CTCCATTTTA GCTTCCTTAG CTCCTGAAAA TCTCGACGGA TCCTAACTCA
              121 AAATCCACAC ATTATACGAG CCGGAAGCAT AAAGTGTAAA GCCTGGGGTG CCTAATGCGG
              181 CCGCCATAGT GACTGGATAT GTTGTGTTTT ACAGTATTAT GTAGTCTGTT TTTTATGCAA
              241 AATCTAATTT AATATATTGA TATTTATATC ATTTTACGTT TCTCGTTCAG CTTTTTTGTA
              301 CAAACTTGTG ATATCTTGTC TTCGTTGGGA GTGAATTAGC CCTTCCAGTC CCCCCTTTTC
              361 TTTTAAAAAG TGGCTAAGAT CTACAGCTGC CTTGTAAGTC ATTGGTCTTA AAGGTACCTG
              421 AGGTGTGACT GGAAAACCCA CCTCCTCCTC CTCTTGTGCT TCTAGCCAGG CACAATCAGC
              481 ATTGGTAGCT GCTGTATTGC TACTTGTGAT TGCTCCATGT TTTTCTAGGT CTCGACGGTA
              541 TCGATGCGGG GAGGCGGCCC AAAGGGAGAT CCGACTCGTC TGANGGCGAA NGCGAANANN
              601 CGGAANANGN CGCANAGCCN GCAGCANGCC GCGGGAANGA ANGNCCNCTG GATTGANGGN
              661 CNAANGNANN TANCNNANNN NNNCCNNNGC ANAATCNANG NGGNNNNNCN NNCNANNNNN
            721 CNNNNNANGN NNNNNNCNNN NNNNNNN
            //
            Primer: bGH_rev3 (Pr0885)
            Region: bGHpA,3' LTR,RfA(attR2,ccdB)
            Sequence file: RDB12128_A3Eoc.seq check
            >12128_12128_B1CoF_bGH_rev3_G01_07_ABI08.ab1
                1 NNNNNNNNNN NGNNNGGNGG NNGGGCANAC AACAGATGGC TGGCAACTAG AAGGCACAGT
               61 CGAGGCTGAT CAGCGGGTTT AAACGGGCCC TGCTAGAGAT TTTCCACACT GACTAAAAGG
              121 GTCTGAGGGA TCTCTAGTTA CCAGAGTCAC ACAACAGACG GGCACACACT ACTTGAAGCA
              181 CTCAAGGCAA GCTTTATTGA GGCTTAAGCA GTGGGTTCCC TAGTTAGCCA GAGAGCTCCC
              241 AGGCTCAGAT CTGGTCTAAC CAGAGAGACC CAGTACAGTC CGGATCACCA CTTTGTACAA
              301 GAAAGCTGAA CGAGAAACGT AAAATGATAT AAATATCAAT ATATTAAATT AGATTTTGCA
              361 TAAAAAACAG ACTACATAAT ACTGTAAAAC ACAACATATC CAGTCACTAT GGTCGACCTG
              421 CAGACTGGCT GTGTATAAGG GAGCCTGACA TTTATATTCC CCAGAACATC AGGTTAATGG
              481 CGTTTTTGAT GTCATTTTCG CGGTGGCTGA GATCAGCCAC TTCTTCCCCG ATAACGGAGA
              541 CCGGCACACT GGCCATATCG GTGGTCATCA TGCGCCAGCT TTCATCCCCG ATATGCACCA
              601 CCGGGTAAAG TTCACGGGAG ANTTTATCTG ACAGCANANG TGCACNGGCC NGGGGGNNNA
              661 CCATCCGTCG CCCGGNNNNN NCNNTNATAT CNCTNNGNAC NNNCNNNANN NGACNANNNN
            721 NNNNNN
            //
            Primer: HIV-B_R (Pr0673)
            Region: HIV-1 psi,5' LTR,CMV pro,CMV en
            Sequence file: RDB12128_A3Eod.seq check
            >12128_12128_B1CoF_HIV-B_R_D01_04_ABI08.ab1
                1 NNNNNNNNNN NNNNNNNNNN NNNTTTTGGC GTACTCNCCA GTCGCCGCCC CTCGCCTCTT
               61 GCCGTGCGCG CTTCAGCAAG CCGAGTCCTG CGTCGAGAGA GCTCCTCTGG TTTCCCTTTC
              121 GCTTTCAAGT CCCTGTTCGG GCGCCACTGC TAGAGATTTT CCACACTGAC TAAAAGGGTC
              181 TGAGGGATCT CTAGTTACCA GAGTCACACA ACAGACGGGC ACACACTACT TGAAGCACTC
              241 AAGGCAAGCT TTATTGAGGC TTAAGCAGTG GGTTCCCTAG TTAGCCAGAG AGCTCCCAGG
              301 CTCAGATCTG GTCTAACCAG AGAGACCCAG TACAGGCAAA ACGCGCTGCT TATATAGACC
              361 TCCCACCGTA CACGCCTACC GCCCATTTGC GTCAATGGGG CGGAGTTGTT ACGACATTTT
              421 GGAAAGTCCC GTTGATTTTG GTGCCAAAAC AAACTCCCAT TGACGTCAAT GGGGTGGAGA
              481 CTTGGAAATC CCCGTGAGTC AAACCGCTAT CCACGCCCAT TGATGTACTG CCAAAACCGC
              541 ATCACCATGG TAATAGCGAT GACTAATACG TAGATGTACT GCCAAGTAGG AAAGTCCCAT
              601 AANGTCATGT ACTNNNCATA ATGCCNGGCG GGCCATTTAN CGTCNTTGAC GTCNNNANGG
              661 GGCGNANTTN GNNNATGATA CACTNGNTGT ACTGNCNNNN GGGNANNTNA NNNNNANNNN
            721 NNNNCNNNNN NNNNN
            //
            Primer: RRE_F1 (Pr0796)
            Region: RRE
            Sequence file: RDB12128_A3Eoe.seq check
            >12128_12128_B1CoF_RRE_F1_E01_05_ABI08.ab1
                1 NNNNNNNNNN NNNGNNNNNN NNNANNNTTT GCTGAGGGCT ATTGAGGCGC AACAGCATCT
               61 GTTGCAACTC ACAGTCTGGG GCATCAAGCA GCTCCAGGCA AGAATCCTGG CTGTGGAAAG
              121 ATACCTAAAG GATCAACAGC TCCTGGGGAT TTGGGGTTGC TCTGGAAAAC TCATTTGCAC
              181 CACTGCTGTG CCTTGGAATG CTAGTTGGAG TAATAAATCT CTGGAACAGA TTTGGAATCA
              241 CACGACCTGG ATGGAGTGGG ACAGAGAAAT TAACAATTAC ACAAGCTTAA TACACTCCTT
              301 AATTGAAGAA TCGCAAAACC AGCAAGAAAA GAATGAACAA GAATTATTGG AATTAGATAA
              361 ATGGGCAAGT TTGTGGAATT GGTTTAACAT AACAAATTGG CTGTGGTATA TAAAATTATT
              421 CATAATGATA GTAGGAGGCT TGGTAGGTTT AAGAATAGTT TTTGCTGTAC TTTCTATAGT
              481 GAATAGAGTT AGGCAGGGAT ATTCACCATT ATCGTTTCAG ACCCACCTCC CAACCCCGAG
              541 GGGACCCGAC AGGCCCGAAN GAATAGAAGA AGAANGTGGA GAGAGAGACA GAGACNGATC
              601 CATTCGATTA GTGAACGGAT CTACNAATGG CAGTATTCAT CCNCAATTTT AAAAGAAAAG
              661 GGGGGNNTGG GGGGNACNGT GCNNGGNAAA GANANNANAN NTAATANCAN NNANNTNCNA
            721 NNNAAGNNNN NAANNNNNNN NNN
            //
            Primer: cPPT/CTS-E_R (Pr0725)
            Region: cPPT_CTS
            Sequence file: RDB12128_A3Eof.seq check
            >12128_12128_B1CoF_cPPT_CTS-E_R_F01_06_ABI08.ab1
                1 NNNNNNNNNN NNNNTTTGNA TTCTTTAGTT TGTATGTCTG TTGCTATTAT GTCTACTATT
               61 CTTTCCCCTG CACTGTACCC CCCAATCCCC CCTTTTCTTT TAAAATTGTG GATGAATACT
              121 GCCATTTGTA GATCCGTTCA CTAATCGAAT GGATCTGTCT CTGTCTCTCT CTCCACCTTC
              181 TTCTTCTATT CCTTCGGGCC TGTCGGGTCC CCTCGGGGTT GGGAGGTGGG TCTGAAACGA
              241 TAATGGTGAA TATCCCTGCC TAACTCTATT CACTATAGAA AGTACAGCAA AAACTATTCT
              301 TAAACCTACC AAGCCTCCTA CTATCATTAT GAATAATTTT ATATACCACA GCCAATTTGT
              361 TATGTTAAAC CAATTCCACA AACTTGCCCA TTTATCTAAT TCCAATAATT CTTGTTCATT
              421 CTTTTCTTGC TGGTTTTGCG ATTCTTCAAT TAAGGAGTGT ATTAAGCTTG TGTAATTGTT
              481 AATTTCTCTG TCCCACTCCA TCCAGGTCGT GTGATTCCAA ATCTGTTCCA GAGATTTATT
              541 ACTCCNACTA GCATTCCNAG GCACAGCAGT GGTGCAAATG AGTTTTCCNG AGCAACCCCA
              601 AATCCCCAGG AGCTGTTGAT CCTTTANGTA TCTTTCCNCA GCCNGGANTC TTGNCNGGAN
              661 CTGCTTGATG CCCCNNACNG NGANTTGCNN CNNANGCNGT NGCGCCTNNN NNNNCNNCNN
            721 CNANNNNNNN GCNGCNNNNN NNNNN
            //
            Primer: PRE_rev (Pr0250)
            Region: PRE,mRFP1 3'
            Sequence file: RDB12128_A3Eog.seq check
            >12128_12128_B1CoF_PRE_rev_B01_02_ABI08.ab1
                1 NNNNNNNNNN NNNNGNNNNN NAGCAACNTA GTTAAGAATA CCAGTCAATC TTTCACAAAT
               61 TTTGTAATCC AGAGGTTGAT TATCGATAAG CTTGATCCCT CGATGTTAAC TCTAGAGGAT
              121 CCGCGGCCGC GAATTCTTAG GCGCCGGTGG AGTGGCGGCC CTCGGCGCGC TCGTACTGTT
              181 CCACGATGGT GTAGTCCTCG TTGTGGGAGG TGATGTCCAG CTTGATGTCG GTCTTGTAGG
              241 CGCCGGGCAG CTGCACGGGC TTCTTGGCCA TGTAGGTGGT CTTGACCTCG GCGTCGTAGT
              301 GGCCGCCGTC CTTCAGCTTC AGCCTCATCT TGATCTCGCC CTTCAGGGCG CCGTCCTCGG
              361 GGTACATCCG CTCGGTGGAG GCCTCCCAGC CCATGGTCTT CTTCTGCATT ACGGGGCCGT
              421 CGGAGGGGAA GTTGGTGCCG CGCAGCTTCA CCTTGTAGAT GAACTCGCCG TCCTGCAGGG
              481 AGGAGTCCTG GGTCACGGTC ACCACGCCGC CGTCCTCGAA GTTCATCACG CGCTCCCACT
              541 TGAAGCCCTC GGGGAANGAC AGCTTCNAGT AGTCGGGGAT GTCGGCGGGG TGCTTCACGT
              601 ANGCCTTGGA GCCGTACTGG AACTGANGGG NNAGGANGTC CNANGCGAAN GGNAGGGGGC
              661 CGCCCTNGNN CNNCTTNNGC TNNNNNGNCT GGNNGNCCNC NNNNGGNCGG NCNNNNNCNT
            721 CNNNNNNNTN NNNNNNNNN
            //

            Please visit Sequencing and PCR primers for primer information.


            References

            Original, user report and related articles

            user_report Ishibashi, R., Development of an in vivo cleavable donor plasmid for targeted transgene integration by CRISPR-Cas9 and CRISPR-Cas12a. Sci. Rep. 12 (1): 17775 (2022). PMID 36272994.
            user_report Ikeda, M., Dormant Pluripotent Cells Emerge during Neural Differentiation of Embryonic Stem Cells in a FoxO3-Dependent Manner. Mol. Cell. Biol. 37 (5). pii: e00417-16 (2016). PMID 27956699.

            2023.05.22

            GNP_filter3_RDBDEP_html_230512.pl